ML

Machine Learning

r0:21222df107462b80fde54a74d060bc7e

When silence is safer: a review and decision-theoretic framework for LLM abstention in healthcare

Large language models (LLMs) are designed to generate answers to user prompts, which often drives them to respond even when uncertainty is high, information is incomplete, or a refusal would be more appropriate. In healthcare, this tendency can be dangerous: confidently stated but inaccurate medical advice can cause significant harm, making the ability to abstain especially important. In this paper, we review studies investigating LLM abstention behaviors in healthcare. The literature highlights two main motivations: (1) uncertainty-driven abstention, where the model withholds a response when confidence is low, and (2) safety-driven abstention, where the model declines to provide potentially harmful information. Most existing mechanisms are extrinsic and rely on auxiliary tools to determine when to abstain. We find that state-of-the-art LLMs still struggle to refuse inappropriate prompts, and that few benchmarks evaluate abstention in realistic medical scenarios, where performance lags behind other domains. Building on these findings, we introduce a decision-theoretic formalization of abstention that models the trade-off between answering and withholding responses under uncertainty and potential harm. Based on this formulation, we present MedSAFE, a framework for evaluating abstention in clinical dialogs, and demonstrate its operationalization through a proof-of-concept pilot across clinical scenarios derived from the review.

When silence is safer: a review and decision-theoretic framework for LLM abstention in healthcare Leer más »

r0:e8a2060e33594781594577f87d876bb1

Advancing regulatory variant effect prediction with AlphaGenome

Deep learning models that predict functional genomic measurements from DNA sequences are powerful tools for deciphering the genetic regulatory code. Existing methods involve a trade-off between input sequence length and prediction resolution, thereby limiting their modality scope and performance1,2,3,4,5. We present AlphaGenome, a unified DNA sequence model, which takes as input 1 Mb of DNA sequence and predicts thousands of functional genomic tracks up to single-base-pair resolution across diverse modalities. The modalities include gene expression, transcription initiation, chromatin accessibility, histone modifications, transcription factor binding, chromatin contact maps, splice site usage and splice junction coordinates and strength. Trained on human and mouse genomes, AlphaGenome matches or exceeds the strongest available external models in 25 of 26 evaluations of variant effect prediction. The ability of AlphaGenome to simultaneously score variant effects across all modalities accurately recapitulates the mechanisms of clinically relevant variants near the TAL1 oncogene6. To facilitate broader use, we provide tools for making genome track and variant effect predictions from sequence.

Advancing regulatory variant effect prediction with AlphaGenome Leer más »

r0:e605066113bd05bcb2ad6161c651d958- Auto Quantum Circuits

Auto Quantum Circuits

«AutoQML, self-assembling circuits, hyper-parameterized Quantum ML platform, using cirq, tensorflow and tfq. Trillions of possible qubit registries, gate combinations and moment sequences, ready to be adapted into your ML flow. Here I demonstrate climatechange, jameswebbspacetelescope and microbiology vision applications… [Thus far, a circuit with 16-Qubits and a gate sequence of [ YY ] – [ XX ] – [CNOT] has performed the best, per my blend of metrics…].

Auto Quantum Circuits Leer más »

Machine learning in medicine: a practical introduction

Machine learning in medicine: a practical introduction

Following visible successes on a wide range of predictive tasks, machine learning techniques are attracting substantial interest from medical researchers and clinicians. We address the need for capacity development in this area by providing a conceptual introduction to machine learning alongside a practical guide to developing and evaluating predictive algorithms using freely-available open source software and public domain data

Machine learning in medicine: a practical introduction Leer más »

Interpretable Machine Learning (A Guide for Making Black Box Models Explainable)

Interpretable Machine Learning (A Guide for Making Black Box Models Explainable)

The book focuses on machine learning models for tabular data (also called relational or structured data) and less on computer vision and natural language processing tasks. Reading the book is recommended for machine learning practitioners, data scientists, statisticians, and anyone else interested in making machine learning models interpretable.

Interpretable Machine Learning (A Guide for Making Black Box Models Explainable) Leer más »

Explaining Autonomous Driving by Learning End-to-End Visual Attention

Explaining Autonomous Driving by Learning End-to-End Visual Attention

In this work we propose to train an imitation learning based agent equipped with an attention model. The attention model allows us to understand what part of the image has been deemed most important. Interestingly, the use of attention also leads to superior performance in a standard benchmark using the CARLA driving simulator.

Explaining Autonomous Driving by Learning End-to-End Visual Attention Leer más »

The Art of Machine Learning (Algorithms + Data + R)

The Art of Machine Learning (Algorithms + Data + R)

I wrote this book because: • ML is not a recipe. It is not a matter of knowing the syntax and mechanics of various software packages.• ML is an art, not a science. (Hence the title of this book). • One does not have to be a math whiz or know advanced math in orer to use ML effectively, but one does need to understand the concepts well — the Why? and How? of ML methods

The Art of Machine Learning (Algorithms + Data + R) Leer más »