Medicine (Paper)

r0:21222df107462b80fde54a74d060bc7e

When silence is safer: a review and decision-theoretic framework for LLM abstention in healthcare

Large language models (LLMs) are designed to generate answers to user prompts, which often drives them to respond even when uncertainty is high, information is incomplete, or a refusal would be more appropriate. In healthcare, this tendency can be dangerous: confidently stated but inaccurate medical advice can cause significant harm, making the ability to abstain especially important. In this paper, we review studies investigating LLM abstention behaviors in healthcare. The literature highlights two main motivations: (1) uncertainty-driven abstention, where the model withholds a response when confidence is low, and (2) safety-driven abstention, where the model declines to provide potentially harmful information. Most existing mechanisms are extrinsic and rely on auxiliary tools to determine when to abstain. We find that state-of-the-art LLMs still struggle to refuse inappropriate prompts, and that few benchmarks evaluate abstention in realistic medical scenarios, where performance lags behind other domains. Building on these findings, we introduce a decision-theoretic formalization of abstention that models the trade-off between answering and withholding responses under uncertainty and potential harm. Based on this formulation, we present MedSAFE, a framework for evaluating abstention in clinical dialogs, and demonstrate its operationalization through a proof-of-concept pilot across clinical scenarios derived from the review.

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r0:e8a2060e33594781594577f87d876bb1

Advancing regulatory variant effect prediction with AlphaGenome

Deep learning models that predict functional genomic measurements from DNA sequences are powerful tools for deciphering the genetic regulatory code. Existing methods involve a trade-off between input sequence length and prediction resolution, thereby limiting their modality scope and performance1,2,3,4,5. We present AlphaGenome, a unified DNA sequence model, which takes as input 1 Mb of DNA sequence and predicts thousands of functional genomic tracks up to single-base-pair resolution across diverse modalities. The modalities include gene expression, transcription initiation, chromatin accessibility, histone modifications, transcription factor binding, chromatin contact maps, splice site usage and splice junction coordinates and strength. Trained on human and mouse genomes, AlphaGenome matches or exceeds the strongest available external models in 25 of 26 evaluations of variant effect prediction. The ability of AlphaGenome to simultaneously score variant effects across all modalities accurately recapitulates the mechanisms of clinically relevant variants near the TAL1 oncogene6. To facilitate broader use, we provide tools for making genome track and variant effect predictions from sequence.

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R0:507c2e7fe07ef9a317eb4c7a51869fdc-Federated Learning: Issues in Medical Application

Federated Learning: Issues in Medical Application

In this presentation, the current issues to make federated learning flawlessly useful in the real world will be briefly overviewed. They are related to data/system heterogeneity, client management, traceability, and security. Also, we introduce the modularized federated learning framework, we currently develop, to experiment various techniques and protocols to find solutions for aforementioned issues. The framework will be open to public after development completes.

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Multi-Image Steganography Using Deep Neural Networks

Multi-Image Steganography Using Deep Neural Networks

Steganography is the science of hiding a secret message within an ordinary public message. Over the years, steganography has been used to encode a lower resolution image into a higher resolution image by simple methods like LSB manipulation. We aim to utilize deep neural networks for the encoding and decoding of multiple secret images inside a single cover image of the same resolution.

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R0:daa46e0033d013818bcc056d269d5737-Unsupervised deep clustering and reinforcement learning can accurately segment MRI brain tumors with very small training sets

Unsupervised deep clustering and reinforcement learning can accurately segment MRI brain tumors with very small training sets

«We have demonstrated a proof-of-principle application of unsupervised deep clustering and reinforcement learning to segment brain tumors. The approach represents human-allied AI that requires minimal input from the radiologist without the need for hand-traced annotation».

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Side-Channel Sensing: Exploiting Side-Channels to Extract Information for Medical Diagnostics and Monitoring

Side-Channel Sensing: Exploiting Side-Channels to Extract Information for Medical Diagnostics and Monitoring

Information within systems can be extracted through side-channels; unintended communication channels that leak information. The concept of side-channel sensing is explored, in which sensor data is analysed in non-trivial ways to recover subtle, hidden or unexpected information.

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COCIR analyses application of medical device legislation to Artificial Intelligence

COCIR analyses application of medical device legislation to Artificial Intelligence

«The European Commission has shown its ambition in the area of artificial intelligence (AI) in its recent White Paper on Artificial Intelligence – a European approach to excellence and trust. This White Paper is at the same time a precursor of possible legislation of AI in products and services in the European Union. However, COCIR sees no need for novel regulatory frameworks for AI-based devices in Healthcare, because the requirements of EU MDR and EU IVDR in combination with GDPR are adequate to ensure that same excellence and trust.» (COCIR paper).

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Diagnostic uncertainty calibration: towards reliable machine predictions in medical domain

Diagnostic uncertainty calibration: towards reliable machine predictions in medical domain

We further formalize the metrics for higher-order statistics, including inter-rater disagreement, in a unified way, which enables us to assess the quality of distributional uncertainty. In addition, we propose a novel post-hoc calibration method that equips trained neural networks with calibrated distributions over class probability estimates. With a large-scale medical imaging application, we show that our approach significantly improves the quality of uncertainty estimates in multiple metrics.

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Machine learning in medicine: a practical introduction

Machine learning in medicine: a practical introduction

Following visible successes on a wide range of predictive tasks, machine learning techniques are attracting substantial interest from medical researchers and clinicians. We address the need for capacity development in this area by providing a conceptual introduction to machine learning alongside a practical guide to developing and evaluating predictive algorithms using freely-available open source software and public domain data

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